annotate CA.py @ 46:d83a72eec954

Forgot to add these. Needed for Chapter 6.
author Brian Neal <bgneal@gmail.com>
date Thu, 25 Jul 2013 21:27:36 -0500
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bgneal@46 1 """ Code example from Complexity and Computation, a book about
bgneal@46 2 exploring complexity science with Python. Available free from
bgneal@46 3
bgneal@46 4 http://greenteapress.com/complexity
bgneal@46 5
bgneal@46 6 Copyright 2011 Allen B. Downey.
bgneal@46 7 Distributed under the GNU General Public License at gnu.org/licenses/gpl.html.
bgneal@46 8 """
bgneal@46 9
bgneal@46 10 import numpy
bgneal@46 11
bgneal@46 12 class CA(object):
bgneal@46 13 """A CA is a cellular automaton; the parameters for __init__ are:
bgneal@46 14
bgneal@46 15 rule: an integer in the range 0-255 that represents the CA rule
bgneal@46 16 using Wolfram's encoding.
bgneal@46 17 n: the number of rows (timesteps) in the result.
bgneal@46 18 ratio: the ratio of columns to rows.
bgneal@46 19 """
bgneal@46 20
bgneal@46 21 def __init__(self, rule, n=100, ratio=2):
bgneal@46 22 """Attributes:
bgneal@46 23 table: rule dictionary that maps from triple to next state.
bgneal@46 24 n, m: are the number of rows, columns.
bgneal@46 25 array: the numpy array that contains the data.
bgneal@46 26 next: the index of the next empty row.
bgneal@46 27 """
bgneal@46 28 self.table = self.make_table(rule)
bgneal@46 29 self.n = n
bgneal@46 30 self.m = ratio*n + 1
bgneal@46 31 self.array = numpy.zeros((n, self.m), dtype=numpy.int8)
bgneal@46 32 self.next = 0
bgneal@46 33
bgneal@46 34 def make_table(self, rule):
bgneal@46 35 """Returns a table for the given CA rule. The table is a
bgneal@46 36 dictionary that maps 3-tuples to binary values.
bgneal@46 37 """
bgneal@46 38 table = {}
bgneal@46 39 for i, bit in enumerate(binary(rule, 8)):
bgneal@46 40 t = binary(7-i, 3)
bgneal@46 41 table[t] = bit
bgneal@46 42 return table
bgneal@46 43
bgneal@46 44 def start_single(self):
bgneal@46 45 """Starts with one cell in the middle of the top row."""
bgneal@46 46 self.array[0, self.m/2] = 1
bgneal@46 47 self.next += 1
bgneal@46 48
bgneal@46 49 def start_random(self):
bgneal@46 50 """Start with random values in the top row."""
bgneal@46 51 self.array[0] = numpy.random.random([1,self.m]).round()
bgneal@46 52 self.next += 1
bgneal@46 53
bgneal@46 54 def loop(self, steps=1):
bgneal@46 55 """Executes the given number of time steps."""
bgneal@46 56 [self.step() for i in xrange(steps)]
bgneal@46 57
bgneal@46 58 def step(self):
bgneal@46 59 """Executes one time step by computing the next row of the array."""
bgneal@46 60 i = self.next
bgneal@46 61 self.next += 1
bgneal@46 62
bgneal@46 63 a = self.array
bgneal@46 64 t = self.table
bgneal@46 65 for j in xrange(1,self.m-1):
bgneal@46 66 a[i,j] = t[tuple(a[i-1, j-1:j+2])]
bgneal@46 67
bgneal@46 68 def get_array(self, start=0, end=None):
bgneal@46 69 """Gets a slice of columns from the CA, with slice indices
bgneal@46 70 (start, end). Avoid copying if possible.
bgneal@46 71 """
bgneal@46 72 if start==0 and end==None:
bgneal@46 73 return self.array
bgneal@46 74 else:
bgneal@46 75 return self.array[:, start:end]
bgneal@46 76
bgneal@46 77
bgneal@46 78 def binary(n, digits):
bgneal@46 79 """Returns a tuple of (digits) integers representing the
bgneal@46 80 integer (n) in binary. For example, binary(3,3) returns (0, 1, 1)"""
bgneal@46 81 t = []
bgneal@46 82 for i in range(digits):
bgneal@46 83 n, r = divmod(n, 2)
bgneal@46 84 t.append(r)
bgneal@46 85
bgneal@46 86 return tuple(reversed(t))
bgneal@46 87
bgneal@46 88
bgneal@46 89 def print_table(table):
bgneal@46 90 """Prints the rule table in LaTeX format."""
bgneal@46 91 t = table.items()
bgneal@46 92 t.sort(reverse=True)
bgneal@46 93
bgneal@46 94 print '\\beforefig'
bgneal@46 95 print '\\centerline{'
bgneal@46 96 print '\\begin{tabular}{|c|c|c|c|c|c|c|c|c|}'
bgneal@46 97 print '\\hline'
bgneal@46 98
bgneal@46 99 res = ['prev']
bgneal@46 100 for k, v in t:
bgneal@46 101 s = ''.join([str(x) for x in k])
bgneal@46 102 res.append(s)
bgneal@46 103 print ' & '.join(res) + ' \\\\ \n\\hline'
bgneal@46 104
bgneal@46 105 res = ['next']
bgneal@46 106 for k, v in t:
bgneal@46 107 res.append(str(v))
bgneal@46 108 print ' & '.join(res) + ' \\\\ \n\\hline'
bgneal@46 109
bgneal@46 110 print '\\end{tabular}}'
bgneal@46 111
bgneal@46 112